Andrake, Mark D.: search on Z-Library

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1

A new model for allosteric regulation of phenylalanine hydroxylase: Implications for disease and therapeutics

Jaffe, Eileen K., Stith, Linda, Lawrence, Sarah H., Andrake, Mark, Dunbrack, Roland L.

Journal:

Archives of Biochemistry and Biophysics

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

2

Oligonucleotide-based assays for integrase activity

George Merkel, Mark D. Andrake, Joseph Ramcharan, Anna Marie Skalka

Journal:

Year:

2009

Language:

english

File:

PDF, 366 KB

english, 2009

3

Comparison of metal-dependent catalysis by HIV-1 and ASV integrase proteins using a new and rapid, moderate throughput assay for joining activity in solution

Mark D Andrake, Joseph Ramcharan, George Merkel, Xue Zhi Zhao, Terrence R Burke, Anna Marie Skalka

Journal:

AIDS Research and Therapy

Year:

2009

Language:

english

File:

PDF, 790 KB

english, 2009

4

Defects in DNA Repair Genes Predict Response to Neoadjuvant Cisplatin-based chemotherapy in Muscle-invasive Bladder Cancer

Plimack, Elizabeth R., Dunbrack, Roland L., Brennan, Timothy A., Andrake, Mark D., Zhou, Yan, Serebriiskii, Ilya G., Slifker, Michael, Alpaugh, Katherine, Dulaimi, Essel, Palma, Norma, Hoffman-Censits

Journal:

European Urology

Year:

2015

Language:

english

File:

PDF, 2.00 MB

english, 2015

5

Nuclear import of Avian Sarcoma Virus integrase is facilitated by host cell factors

Mark D Andrake, Monica M Sauter, Kim Boland, Andrew D Goldstein, Maryem Hussein, Anna Marie Skalka

Journal:

Year:

2008

Language:

english

File:

PDF, 1.87 MB

english, 2008

6

Biological function derived from predicted structures in CASP11

Huwe, Peter J., Xu, Qifang, Shapovalov, Maxim V., Modi, Vivek, Andrake, Mark D., Dunbrack, Roland L.

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2016

Language:

english

File:

PDF, 1.63 MB

english, 2016

7

The conformational feasibility for the formation of reaching dimer in ASV and HIV Integrase: a molecular dynamics study

Balasubramanian, Sangeetha, Rajagopalan, Muthukumaran, Bojja, Ravi Shankar, Skalka, Anna Marie, Andrake, Mark D., Ramaswamy, Amutha

Journal:

Journal of Biomolecular Structure and Dynamics

Year:

2016

Language:

english

File:

PDF, 2.40 MB

english, 2016

8

Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency

Kueppers, Friedrich, Andrake, Mark D., Xu, Qifang, Dunbrack, Roland L., Kim, Joannah, Sanders, Christopher L.

Journal:

BMC Medical Genetics

Year:

2019

File:

PDF, 1.58 MB

2019

9

Mouse modeling and structural analysis of the p.G307S mutation in human cystathionine β-synthase ( CBS ) reveal effects on CBS activity but not stability

Gupta, Sapna, Kelow, Simon, Wang, Liqun, Andrake, Mark, Dunbrack, Roland L., Kruger, Warren D.

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 6.33 MB

english, 2018

10

The Sanpodo NPAF motif is required for Numb-mediated endocytosis but not Notch signaling regulation in Drosophila

Fabrice Roegiers, Diana Zitserman, Ilya Serebriiskii, Mark Andrake, Roland Dunbrack, Xin Tong

Journal:

Developmental Biology

Year:

2009

Language:

english

File:

PDF, 61 KB

english, 2009

11

Plk2 Loss Commonly Occurs in Colorectal Carcinomas but not Adenomas: Relationship to mTOR Signaling

Matthew, Elizabeth M., Yang, Zhaohai, Peri, Suraj, Andrake, Mark, Dunbrack, Roland, Ross, Eric, El-Deiry, Wafik S.

Journal:

Year:

2018

Language:

english

File:

PDF, 4.45 MB

english, 2018

12

Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency

Kueppers, Friedrich, Andrake, Mark D., Xu, Qifang, Dunbrack, Roland L., Kim, Joannah, Sanders, Christopher L.

Journal:

BMC Medical Genetics

Year:

2019

Language:

english

File:

PDF, 1.58 MB

english, 2019

13

Kinase-Mediated Changes in Nucleosome Conformation Trigger Chromatin Decondensation via Poly(ADP-Ribosyl)ation

Thomas, Colin J., Kotova, Elena, Andrake, Mark, Adolf-Bryfogle, Jared, Glaser, Robert, Regnard, Catherine, Tulin, Alexei V.

Journal:

Year:

2014

Language:

english

File:

PDF, 3.45 MB

english, 2014

14

Distinct Orai-Coupling Domains in Stim1 and Stim2 Define the Orai-Activating Site

Wang, Xizhuo, Wang, Youjun, Zhou, Yandong, Hendron, Eunan, Mancarella, Salvatore, Andrake, Mark D., Rothberg, Brad S., Soboloff, Jonathan, Gill, Donald L.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

15

Retroviral Integrase: Then and Now

Andrake, Mark D., Skalka, Anna Marie

Journal:

Annual Review of Virology

Year:

2015

Language:

english

File:

PDF, 2.92 MB

english, 2015

16

The Human Protein PRR14 Tethers Heterochromatin to the Nuclear Lamina during Interphase and Mitotic Exit

Poleshko, Andrey, Mansfield, Katelyn M., Burlingame, Caroline C., Andrake, Mark D., Shah, Neil R., Katz, Richard A.

Journal:

Year:

2013

Language:

english

File:

PDF, 3.10 MB

english, 2013

17

BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations

Deihimi, Safoora, Lev, Avital, Slifker, Michael, Shagisultanova, Elena, Xu, Qifang, Jung, Kyungsuk, Vijayvergia, Namrata, Ross, Eric A., Xiu, Joanne, Swensen, Jeffrey, Gatalica, Zoran, Andrake, Mark,

Journal:

Year:

2017

Language:

english

File:

PDF, 5.82 MB

english, 2017

18

DNA Polymerase of Bacteriophage T4 is an Autogenous Translational Repressor

Mark Andrake, Nancy Guild, Tien Hsu, Larry Gold, Craig Tuerk and Jim Karam

Journal:

Proceedings of the National Academy of Sciences

Year:

1988

Language:

english

File:

PDF, 1.08 MB

english, 1988

19

Distinct Orai-coupling domains in STIM1 and STIM2 define the Orai-activating site

Wang, Xizhuo, Wang, Youjun, Zhou, Yandong, Hendron, Eunan, Mancarella, Salvatore, Andrake, Mark D, Rothberg, Brad S, Soboloff, Jonathan, Gill, Donald L

Journal:

Nature Communications

Year:

2014

Language:

english

File:

PDF, 1.67 MB

english, 2014

20

Genetic Variants That Presdispose to DNA Double-strand Breaks in Lymphocytes from a Subset of Patients With Familial Colorectal Carcinomas

Arora, Sanjeevani, Yan, Hong, Cho, Iltaeg, Fan, Hua-Ying, Luo, Biao, Gai, Xiaowu, Bodian, Dale L., Vockley, Joseph G., Zhou, Yan, Handorf, Elizabeth, Egleston, Brian L., Andrake, Mark, Nicolas, Emmanu

Journal:

Gastroenterology

Year:

2015

Language:

english

File:

PDF, 3.90 MB

english, 2015

21

Small-Molecule Disruption of RAD52 Rings as a Mechanism for Precision Medicine in BRCA-Deficient Cancers

Chandramouly, Gurushankar, McDevitt, Shane, Sullivan, Katherine, Kent, Tatiana, Luz, Antonio, Glickman, J. Fraser, Andrake, Mark, Skorski, Tomasz, Pomerantz, Richard T.

Journal:

Chemistry & Biology

Year:

2015

Language:

english

File:

PDF, 2.96 MB

english, 2015

22

Synthetic secoisolariciresinol diglucoside (LGM2605) inhibits myeloperoxidase activity in inflammatory cells

Mishra, Om P., Popov, Anatoliy V., Pietrofesa, Ralph A., Nakamaru-Ogiso, Eiko, Andrake, Mark, Christofidou-Solomidou, Melpo

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2018

Language:

english

File:

PDF, 6.04 MB

english, 2018

23

Mode of inhibition of HIV-1 Integrase by a C-terminal domain-specific monoclonal antibody*

Joseph Ramcharan, Diana M Colleluori, George Merkel, Mark D Andrake, Anna Marie Skalka

Journal:

Year:

2006

Language:

english

File:

PDF, 824 KB

english, 2006

24

Mapping the Epitope of an Inhibitory Monoclonal Antibody to the C-terminal DNA-binding Domain of HIV-1 Integrase

Yi, Jizu, Cheng, Hong, Andrake, Mark D., Dunbrack, Roland L., Roder, Heinrich, Skalka, Anna Marie

Journal:

Journal of Biological Chemistry

Year:

2002

Language:

english

File:

PDF, 1.13 MB

english, 2002

25

Cancer Signature Investigation: ERBB2 ( HER2 )-Activating Mutation and Amplification-Positive Breast Carcinoma Mimicking Lung Primary

Shih, Jennifer, Bashir, Babar, Gustafson, Karen S., Andrake, Mark, Dunbrack, Roland L., Goldstein, Lori J., Boumber, Yanis

Journal:

Journal of the National Comprehensive Cancer Network

Year:

2015

Language:

english

File:

PDF, 397 KB

english, 2015

26

Radiation activates myeloperoxidase (MPO) to generate active chlorine species (ACS) via a dephosphorylation mechanism - inhibitory effect of LGM2605

Mishra, Om P., Popov, Anatoliy V., Pietrofesa, Ralph A., Hwang, Wei-Ting, Andrake, Mark, Nakamaru-Ogiso, Eiko, Christofidou-Solomidou, Melpo

Journal:

Biochimica et Biophysica Acta (BBA) - General Subjects

Year:

2020

File:

PDF, 9.34 MB

2020

27

Re-purposing clinical kinase inhibitors to enhance chemosensitivity by overriding checkpoints

Beeharry, Neil, Banina, Eugenia, Hittle, James, Skobeleva, Natalia, Khazak, Vladimir, Deacon, Sean, Andrake, Mark, Egleston, Brian L, Peterson, Jeffrey R, Astsaturov, Igor, Yen, Timothy J

Journal:

Year:

2014

Language:

english

File:

PDF, 3.35 MB

english, 2014

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